History and well, poems, plays, music, etc, are all written and influenced by the victors. And from what I've read Shakespeare was like really good with the Queen? I'm pretty sure that's true. It's how it was in 'Shakespeare in Love' okay. Which fun movie. You should watch.
So that's probably why he wrote what he wrote.
[Filter] I don't think I've seen or read the one you're talked about in yet, but since it seems like it probably didn't speak highly of you then its good you didn't do whatever it is he said you did.