Yes, that's exactly what happened. You expect it to overlap that way, in a sense. If there were ... any of my friends here at all I'd expect them to be friendly.
But in this case, the person that he is in the dreams is responsible for wrecking my ship, killing my crew, and nearly taking me hostage. So I am... less inclined to be friendly with him if I ever see him again. And yet, there's no shaking the good memories that exist.