To say that this was a bit of a rude awakening would not be accurate. This was a very rude, particularly impolite and downright hostile awakening, were anything being awakened. Really, it was an interruption and quite frankly all of this thinking was superfluous.
But it was the only thing keeping the Doctor from yelling at his daughter, which even in this state he really didn't want to do.
"... Jenny? What are you doing here?" As far as articulate conversation however, she'd have to give him a moment.