Bruce wasn't exactly inside of the Hulk. Well, he was, but it was so far back in the Hulk's mind he had absolutely no control over the situation. It was like he was barely even thee at all and it was doubtful that he would remember any of this whenever he recovered.
The Hulk let out a roar at the Iron Man and wrenched his fist away from him before jumping away to the next building. Right now the Iron Man was just another nuisance to get away from, but if he kept pestering the Hulk might have to fight back.