That's how deception works, Skye. I wasn't getting Raina for Whitehall. I was talking her back to your father. I was taking you both back. And I knew that SHIELD would follow. I ordered them not to shoot down the Bus specifically so they could. Whitehall countermanded my order. I knew that was a possibility, but with the delay between my order and Whitehall's, May & Trip had enough time to react to whatever would be thrown at them.
SHIELD would storm the base. Your father would get to kill Whitehall, like he wanted, while SHIELD took care of his men. Raina would do whatever it was she wanted to, fulfill her destiny or whatever. And I would get you out in the midst of the insanity and regroup with everyone after the dust died down. That was the plan. That was what was supposed to happen, and it just all went off the track.