"He doesn't know exactly... I always thought it would be better if only I knew so there was less of a chance for anyone to find out where you were. I told him I brought you someplace safe." He replies, and it was true. He trusted Matt, of course he did, but it was just a precaution. Parkman had understood.
He winces as if she's physically hurt him with her words, shaking his head. "Molly, there are a lot of things that go into this that is the reason why Matt and I aren't living together any longer." He bites his lip for a moment, teeth digging into the flesh for a moment while he feels his gut churn with guilt. "It's all my fault, Molly... I was persuaded to work for the Company, and I lived at their facilities so they could keep their eye on me, I suppose. I'm sorry... i-if you want, I can see if Matt and Daphne would like to have you full time. If you don't want to stay with me."
Molly was Mohinder's only little joy in life, even as earlier he and Gabriel had recalled their trip together; how Gabriel said he was Zane and how they traveled together. That had made him smile, but it was Molly who really could make him feel happy. Give him a purpose. She was the reason, he was sure, that he pulled himself out of that burning building instead of just giving up and dying.
"Matt and I love you very much, Molly. You're my little girl. I don't know a day that went by that I didn't wish we could see each other again. But now I feel as if I have let my little girl down. I've not been a very good man, and the guilt makes me feel sick every time I think about it. I... just thought... I am sorry I've disappointed you."